Installation

Get the code

• Ensure you have the version control system git installed on your machine.
• Ensure that you have python installed on your machine, at least version 2.7.
• Clone the repository:
  • git clone git://github.com/Radiomics/pyradiomics

Installation on your system

• For unix like systems (MacOSX, linux):

  • cd pyradiomics

  • sudo python setup.py install

  • If you don’t have sudo/admin rights on your machine, you need to locally install numpy, nose, tqdm, PyWavelets, SimpleITK. In a bash shell:

    pip install --user --upgrade pip
    export PATH=$HOME/.local/bin:$PATH
    pip install --user numpy
    pip install --user nose
    pip install --user nose-parameterized
    pip install --user tqdm
    export PYTHONPATH=$HOME/.local/lib64/python2.7/site-packages
    git clone https://github.com/nigma/pywt.git && cd pywt && python setup.py install --prefix=$HOME/.local && cd ..
    pip install --user SimpleITK
    

    • If the installation of SimpleITK fails (newer versions not available on the default servers, you can get it manually from sourceforge

      • For linux:

        wget 'https://sourceforge.net/projects/simpleitk/files/SimpleITK/0.10.0/Python/SimpleITK-0.10.0-1-cp27-cp27m-manylinux1_x86_64.whl'
        pip install --user 'SimpleITK-0.10.0-1-cp27-cp27m-manylinux1_x86_64.whl'
        

      • For Mac:

        wget 'https://sourceforge.net/projects/simpleitk/files/SimpleITK/0.10.0/Python/SimpleITK-0.10.0-cp27-cp27m-macosx_10_6_intel.whl'
        pip install --user 'SimpleITK-0.10.0-cp27-cp27m-macosx_10_6_intel.whl'