Installation¶
Get the code¶
- Ensure you have the version control system
git
installed on your machine. - Ensure that you have
python
installed on your machine, at least version 2.7. - Clone the repository:
git clone git://github.com/Radiomics/pyradiomics
Installation on your system¶
For unix like systems (MacOSX, linux):
cd pyradiomics
sudo python setup.py install
If you don’t have sudo/admin rights on your machine, you need to locally install numpy, nose, tqdm, PyWavelets, SimpleITK. In a bash shell:
pip install --user --upgrade pip export PATH=$HOME/.local/bin:$PATH pip install --user numpy pip install --user nose pip install --user nose-parameterized pip install --user tqdm export PYTHONPATH=$HOME/.local/lib64/python2.7/site-packages git clone https://github.com/nigma/pywt.git && cd pywt && python setup.py install --prefix=$HOME/.local && cd .. pip install --user SimpleITK
If the installation of SimpleITK fails (newer versions not available on the default servers, you can get it manually from sourceforge
For linux:
wget 'https://sourceforge.net/projects/simpleitk/files/SimpleITK/0.10.0/Python/SimpleITK-0.10.0-1-cp27-cp27m-manylinux1_x86_64.whl' pip install --user 'SimpleITK-0.10.0-1-cp27-cp27m-manylinux1_x86_64.whl'
For Mac:
wget 'https://sourceforge.net/projects/simpleitk/files/SimpleITK/0.10.0/Python/SimpleITK-0.10.0-cp27-cp27m-macosx_10_6_intel.whl' pip install --user 'SimpleITK-0.10.0-cp27-cp27m-macosx_10_6_intel.whl'